File:HIV-SIV-phylogenetic-tree straight.svg

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Summary

Phylogenetic Tree of the SIV and HIV viruses.

  • Viruses Depicted:
  • Human
    HIV-1 M (Main) group, including reference strains from subtypes A-J. Group M is responsible for the pandemic.
    HIV-1 O (Outlier) group, most commonly found in West Africa
    HIV-1 N (Not-M, Not-O) group, found in a very small number of individuals in West Africa
    HIV-1 M group reference strains: A_UG.U455, A_KE.Q2317, B_US.JRFL, B_US.WEAU160, C_ET.ETH2220, C_IN.21068, D_ZR.NDK, D_ZR.ELI, F_FI.FIN6393, F_BE.VI850, G_SE.SE6165, G_BE.DRCBL, H_CF.90CF056, H_BE.VI997, J_SE.SE91733, J_SE.SE92809, and CRF01 AE_CF.90CF402 and AE_TH.CM240, which are subtype A in pol.
    HIV-1 N group: N_CM.YBF30
    HIV-1 O group: O_CM.ANT70, O_CM.MVP5180
    HIV-2 subtypes A and B: H2A_DE.BEN, H2A_SN.ST, H2B_GH.D205, and H2B_CI.EHO
  • Simian
    SIVcpz from chimpanzee Pan troglodytes troglodytes (P.t.t.):
    SIVcpz.GAB, SIVcpz.US, and SIVcpz.Cam3
    SIVcpz from chimpanzee Pan troglodytes shweinfuthii (P.t.s.): SIVcpz.ANT
    SIV African Green Monkey (SIVagm):
    Tantalus (TAN): SIVagm.TAN1
    Vervet (VER): SIVagm.VERTYO, SIVagm.VERAGM3, SIVagm.VER9063, SIVagm.VER155
    Grivet (GRI): SIVagm.GRI677
    Sabaeus (SAB): SIVagm.SAB1C
    SIV Sooty Mangaby (SIVsm) (also found in captive macaques): SIVsm.mac251, SIVsm.smm9
    SIV L’hoest: SIV.LHOEST
    SIV Mandrill: SIV.MNDGB1
    SIV Sun: SIV.SUN

Licensing

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File history

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Date/TimeThumbnailDimensionsUserComment
current04:57, 5 January 2017Thumbnail for version as of 04:57, 5 January 2017512 × 465 (44 KB)127.0.0.1 (talk)Phylogenetic Tree of the SIV and HIV viruses. <ul> <li> Viruses Depicted:</li> <li> Human <dl> <dd>HIV-1 M (Main) group, including reference strains from subtypes A-J. Group M is responsible for the pandemic. <dl><dd>HIV-1 O (Outlier) group, most commonly found in West Africa</dd></dl> </dd> <dd>HIV-1 N (Not-M, Not-O) group, found in a very small number of individuals in West Africa</dd> <dd>HIV-1 M group reference strains: A_UG.U455, A_KE.Q2317, B_US.JRFL, B_US.WEAU160, C_ET.ETH2220, C_IN.21068, D_ZR.NDK, D_ZR.ELI, F_FI.FIN6393, F_BE.VI850, G_SE.SE6165, G_BE.DRCBL, H_CF.90CF056, H_BE.VI997, J_SE.SE91733, J_SE.SE92809, and CRF01 AE_CF.90CF402 and AE_TH.CM240, which are subtype A in pol.</dd> <dd>HIV-1 N group: N_CM.YBF30</dd> <dd>HIV-1 O group: O_CM.ANT70, O_CM.MVP5180</dd> <dd>HIV-2 subtypes A and B: H2A_DE.BEN, H2A_SN.ST, H2B_GH.D205, and H2B_CI.EHO</dd> </dl> </li> <li> Simian <dl> <dd>SIVcpz from chimpanzee Pan troglodytes troglodytes (P.t.t.):</dd> <dd>SIVcpz.GAB, SIVcpz.US, and SIVcpz.Cam3</dd> <dd>SIVcpz from chimpanzee Pan troglodytes shweinfuthii (P.t.s.): SIVcpz.ANT</dd> <dd>SIV African Green Monkey (SIVagm):</dd> <dd>Tantalus (TAN): SIVagm.TAN1</dd> <dd>Vervet (VER): SIVagm.VERTYO, SIVagm.VERAGM3, SIVagm.VER9063, SIVagm.VER155</dd> <dd>Grivet (GRI): SIVagm.GRI677</dd> <dd>Sabaeus (SAB): SIVagm.SAB1C</dd> <dd>SIV Sooty Mangaby (SIVsm) (also found in captive macaques): SIVsm.mac251, SIVsm.smm9</dd> <dd>SIV L’hoest: SIV.LHOEST</dd> <dd>SIV Mandrill: SIV.MNDGB1</dd> <dd>SIV Sun: SIV.SUN</dd> </dl> </li> </ul>
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