List of sequenced fungi genomes
From Infogalactic: the planetary knowledge core
This list of sequenced fungi genomes contains all the fungal species known to have publicly available complete genome sequences that have been assembled, annotated and published; draft genomes are not included, nor are organelle only sequences.
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Contents
Ascomycota
Ascomycetes
- Neurospora crassa, model eukaryote (2003[1])
- Neurospora tetrasperma FGSC 2508 mat A, model (2010[2])
Dothideomycetes
- Aureobasidium pullulans, A. melanogenum, A. subglaciale and A. namibiae, polyextremotolerant (2014[3])
- Hortaea werneckii, extremely halotolerant (2013[4])
- Leptosphaeria maculans, plant pathogen (2011[5])
- Macrophomina phaseolina, plant pathogen (2012[6])
- Mycosphaerella fijiensis, plant pathogen (2007[7])
- Mycosphaerella graminicola IPO323, wheat pathogen (2008[8])
- Phaeosphaeria nodorum SN15, wheat pathogen (2005[9])
- Pyrenophora tritici-repentis Pt-1C-BFP, wheat pathogen (2007[10])
Eurotiomycetes
- Ajellomyces capsulata several strains, Darling's disease (2009, unpubl.[11])
- Ajellomyces dermatitidis several strains (2009, unpubl.[12])
- Arthroderma benhamiae CBS 112371, skin infection (2010, unpubl.[13])
- Arthroderma gypseum CBS 118893, athlete's foot (2008[14])
- Arthroderma otae CBS 113480, athlete's foot (2008[14])
- Aspergillus aculeatus ATCC16872, industrial use (2010[15])
- Aspergillus carbonarius ITEM 5010, food pathogen (2009[16])
- Aspergillus clavatus Strain:NRRL1 (2008[17])
- Aspergillus fumigatus Strain:A1163, human pathogen (2008[17])
- Aspergillus fumigatus Strain:Af293, human pathogen (2005[18])
- Aspergillus kawachii IFO 4308, food industry (2011[19])
- Aspergillus nidulans Strain:FGSC A4, model organism (2005[20])
- Aspergillus niger Strain:ATCC 1015 (DOE Joint Genome institute)
- Aspergillus niger Strain:CBS 513.88, industrial use (2007[21])
- Aspergillus oryzae Strain:RIB40, industrial use (2005[22])
- Aspergillus terreus NIH 2624, statin producer and pathogen (2005, unpubl.[23])
- Coccidioides immitis, human pathogen, Valley fever (2009[24])
- Coccidioides posadasii C735 delta SOWgp, human pathogen, Valley fever (2009[24])
- Neosartorya fischeri Strain:NRRL181 (2008[17])
- Paracoccidioides brasiliensis, several strains, human pathogen (2007[25]
- Penicillium chrysogenum Strain: Wisconsin54-1255, industrial use (2008[26])
- Penicillium digitatum Strain PHI26 (2012[27])
- Penicillium digitatum Strain Pd1 (2012[27]
- Talaromyces marneffei, human pathogen (2011[28])
- Uncinocarpus reesii (2009[24])
Leotiomycetes
- Blumeria graminis ffsp hordei Strain:DH14, plant pathogen (2010)
- Botrytis cinerea (Botryotinia fuckeliana) Strain:B05.10 and T4, plant pathogen (2011[29])
- Glarea lozoyensis (2012[30])
- Sclerotinia sclerotiorum Strain:1980 (2011[29])
- Ascocoryne sarcoides Strain: NRRL50072 (2012[31])
Pezizomycetes
- Tuber melanosporum Mel28, Périgord black truffle (2010[32])
Saccharomycetes
- Ashbya gossypii Strain:ATCC 10895, plant pathogen (2004[33])
- Candida albicans Strain:WO-1, human pathogen (2009[34])
- Candida dubliniensis CD36, human pathogen (2009[35])
- Candida glabrata Strain:CBS138, human pathogen (2004[36])
- Candida guilliermondii, human pathogen (2009[34])
- Candida lusitaniae, human pathogen (2009[34])
- Candida parapsilosis, human pathogen (2009[34])
- Candida orthopsilosis'', human pathogen (2012[37])
- Candida tropicalis, human pathogen (2009[34])
- Debaryomyces hansenii Strain:CBS767, industrial use (2004[36])
- Debaryomyces hansenii Strain:MTCC 234, salt-tolerant (2012[38])
- Dekkera bruxellensis Strain:CBS2499, wine yeast (2012[39])
- Hansenula polymorpha NCYC 495 leu1.1, industrial use (2010[40])
- Kluyveromyces aestuarii ATCC 18862 (2010, unpubl.[41])
- Kluyveromyces lactis Strain:CLIB210, industrial use (2004[36])
- Kluyveromyces wickerhamii UCD 54-210 (2010, unpubl.[42])
- Lachancea kluyveri (Saccharomyces kluyveri) NRRL Y-12651, plant pathogen (2009[43])
- Lodderomyces elongisporus, human pathogen (2009[34])
- Naumovozyma castellii Strain:AS 2.2404, CBS 4309 (Saccharomyces castellii; 2003,[44] 2011[45])
- Naumovozyma dairenensis Strain:CBS 421 (2011[45])
- Saccharomyces bayanus (2003,[44][46] 2011[47])
- Saccharomyces arboricolus (2013,[48])
- Saccharomyces cerevisiae Strain:JAY291, industrial/model (2009[49])
- Saccharomyces cerevisiae Strain:S288C, industrial/model (1996[50])
- Saccharomyces cerevisiae Strain:Sigma1278b, industrial/model (2010[51])
- Saccharomyces kudriavzevii (2003[44][47])
- Saccharomyces mikatae (2003,[44][46] 2011[47])
- Saccharomyces paradoxus (2003[46] 2009[52])
- Saccharomyces pastorianus Weihenstephan 34/70, industrial, beer (2009[53])
- Scheffersomyces stipitis (Pichia stipitis) CBS 6054, lignin/xylose degrader (2007[54])
- Spathaspora passalidarum NRRL Y-27907, model xylose fermenter (2010[55])
- Tetrapisispora phaffii van der Walt Y 89, CBS 4417 (2011[45])
- Torulaspora delbrueckii Strain:Wallerstein 129, CBS 1146 (2011[45])
- Vanderwaltozyma polyspora DSM 70294 (2007[56])
- Yarrowia lipolytica Strain:CLIB99, industrial use (2004[36])
- Zygosaccharomyces rouxii strain CBS732, food spoiler (2009[57])
Schizosaccharomycetes
- Schizosaccharomyces japonicus yFS275, model for invasive growth (2006[58])
- Schizosaccharomyces pombe Strain:972h, model eukaryote (2002[59])
Sordariomycetes
- Colletotrichum graminicola, corn pathogen (2012[60])
- Colletotrichum higginsianum, Arabidopsis thaliana pathogen (2012[60])
- Chaetomium globosum Strain:CBS 148.51, soil fungus (2005[61])
- Fusarium oxysporum f. sp. lycopersici 4287, human/plant pathogen (2010[62])
- Gibberella moniliformis 7600, plant pathogen (2010[62])
- Gibberella zeae PH-1, plant pathogen (2008[63])
- Gaeumannomyces graminis tritici R3-111a-1 (2010, unpubl.[64])
- Grosmannia clavigera kw1407, plant pathogen (2011[65])
- Magnaporthe grisea, plant pathogen (20054[66])
- Metarhizium acridum CQMa 102, and
- Metarhizium anisopliae ARSEF 23, insect pathogens (2011[67])
- Nectria haematococca MPVI, plastic/pest./lignin degrader (2009[68])
- Podospora anserina :S mat+ (2008[28])
- Sporotrichum thermophile, thermophilic cellulose degrader (2010[69])
- Thielavia terrestris, model thermophile/industrial (2010[70])
- Trichoderma atroviride, industrial/soil, (2010[71])
- Trichoderma reesei QM6a, biomass-degrading (2008[72])
- Trichoderma virens Gv29-8, industrial/pathogen (2007[73])
- Verticillium albo-atrum VaMs.102, plant pathogen (2008, unpubl.[74])
Basidiomycota
Agaricomycetes
- Agaricus bisporus var. bisporus Strain:H97, Champignon (2009[75])
- Auricularia delicata (2012[76])
- Coniophora puteana (2012[76])
- Coprinopsis cinerea (Coprinus cinereus), model organism for multicellular fungi (2010[77])
- Dichomitus squalens (2012[76])
- Fibroporia radiculosa Strain:TFFH 294 (2012[78])
- Fomitiporia mediterranea (2012[76])
- Fomitopsis pinicola (2012[76])
- Gloeophyllum trabeum (2012[76])
- Hebeloma cylindrosporum http://genome.jgi.doe.gov/Hebcy2/Hebcy2.home.html
- Heterobasidion annosum, plant pathogen (2009[79])
- Laccaria bicolor Strain:S238N-H82, mycorrhiza (2008[80])
- Moniliophthora perniciosa, Witches' Broom Disease of cacao (2008[81])
- Phanerochaete chrysosporium Strain:RP78, mycoremediation (2004[82])
- Piriformospora indica endophyte (2011[83])
- Pleurotus ostreatus, industrial/lignin degrader (2010[84])
- Postia placenta, cellulose degrader (2008[72][85])
- Punctularia strigosozonata (2012[76])
- Schizophyllum commune, mushroom (2010[86])
- Serpula lacrymans, plant pathogen (2011[87])
- Stereum hirsutum (2012[76])
- Trametes versicolor (2012[76])
- Wolfiporia cocos (2012[76])
Pucciniomycetes (formerly Urediniomycetes)
- Melampsora laricis-populina, pathogen of populars (2008[88])
- Puccinia graminis f. sp. tritici, plant pathogen (2011[89][90])
- Puccinia triticina 1-1 BBBD Race 1, pathogen of wheat([90])
- Rhodotorula graminis strain WP1, plant symbiont (2010[91])
- Sporobolomyces roseus, associated with plants ([92])
Tremellomycetes
- Cryptococcus (Filobasidiella) neoformans JEC21, human pathogen (2005,[93] other strains unpubl.[94])
- Dacryopinax sp. (2012[76])
- Tremella mesenterica (2012[76])
Ustilaginomycetes
- Malassezia globosa CBS 7966, dandruff-associated (2007[95])
- Malassezia restricta CBS 7877, dandruff-associated (2007[95])
- Sporisorium rellianum, plant pathogen (2010[96])
- Ustilago maydis, plant pathogen (2006[97])
Wallemiomycetes
- Wallemia ichthyophaga, obligate halophile (2013[98])
- Wallemia sebi, xerophile (2012[99])
Chytridiomycota
Chytridiomycota is probably a polyphyletic group[100][101] that includes fungi with spores that have flagella (zoospores) and are a sister group to more advanced land fungi that lack flagella. Several chytrid species are pathogens, but have not had their genomes sequenced yet.
- Batrachochytrium dendrobatidis JEL423, amphibian pathogen (2006[102])
- Batrachochytrium dendrobatidis JAM81, amphibian pathogen (2006[103])
- Spizellomyces punctatus DAOM BR117 (2009[104])
- Allomyces macrogynus ATCC 38327 (Blastocladiomycota) (2009[105])
- Gonapodya prolifera JEL478 (Monoblepharidomycetes) (2011[106])
- Piromyces sp. E2 (Neocallimastigomycota) (2011[107])
- Catenaria anguillulae PL171 (Blastocladiomycota)[108]
Microsporidia
- Encephalitozoon cuniculi, human pathogen (2001[109])
- Encephalitozoon intestinalis ATCC 50506, human pathogen (2010[110])
- Enterocytozoon bieneusi, human pathogen particularly in the context of HIV infection (~60% of genome 2009,[111] 2010[112])
- Nosema ceranae, honey bee pathogen (2009[113])
- Octosporea bayeri OER 3-3, Daphnia pathogen (2009[114])
Zygomycota
Zygomycota is probably a polyphyletic group[115] that contains basal fungal lineages.
- Rhizopus oryzae, human pathogen (mucormycosis) (2009[116])
- Mortierella alpina Strain: ATCC 32222, commercial source of arachidonic acid (2011[117])
See also
- List of sequenced animal genomes
- List of sequenced archaeal genomes
- List of sequenced bacterial genomes
- List of sequenced eukaryotic genomes
- List of sequenced plant genomes
External links
- Fungal Genome Initiative (includes draft genomes)
- UniProt query (complete proteome and fungi)
References
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- ↑ JGI entry
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- ↑ JGI entry
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- ↑ http://www.diark.org/diark/species_list/Pyrenophora_tritici_repentis_Pt_1C_BFP
- ↑ http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gi01094
- ↑ http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gi01787
- ↑ http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gc01529
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- ↑ JGI entry
- ↑ JGI entry
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- ↑ Lua error in package.lua at line 80: module 'strict' not found.
- ↑ Lua error in package.lua at line 80: module 'strict' not found.
- ↑ http://www.diark.org/diark/species_list/Aspergillus_terreus_NIH2624
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- ↑ 28.0 28.1 Lua error in package.lua at line 80: module 'strict' not found. Cite error: Invalid
<ref>tag; name "Woo_2011" defined multiple times with different content Cite error: Invalid<ref>tag; name "Woo_2011" defined multiple times with different content - ↑ 29.0 29.1 Lua error in package.lua at line 80: module 'strict' not found.
- ↑ Lua error in package.lua at line 80: module 'strict' not found.
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- ↑ Lua error in package.lua at line 80: module 'strict' not found.
- ↑ 34.0 34.1 34.2 34.3 34.4 34.5 Lua error in package.lua at line 80: module 'strict' not found.
- ↑ EBI project page
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- ↑ JGI entry
- ↑ http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gc01520
- ↑ http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gc01521
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- ↑ 44.0 44.1 44.2 44.3 Lua error in package.lua at line 80: module 'strict' not found.
- ↑ 45.0 45.1 45.2 45.3 Lua error in package.lua at line 80: module 'strict' not found.
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- ↑ JGI entry
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- ↑ Broad institute entry
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- ↑ EBI project page
- ↑ http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gc01519
- ↑ UBC Press Release
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- ↑ JGI entry
- ↑ JGI entry
- ↑ JGI entry
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- ↑ JGI entry
- ↑ http://www.diark.org/diark/species_list/Verticillium_albo_atrum_VaMs_102
- ↑ JGI entry
- ↑ 76.00 76.01 76.02 76.03 76.04 76.05 76.06 76.07 76.08 76.09 76.10 76.11 Lua error in package.lua at line 80: module 'strict' not found.
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- ↑ JGI entry
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- ↑ JGI entry
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- ↑ JGI entry
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- ↑ Batrachochytrium dendrobatidis at BROAD
- ↑ Batrachochytrium dendrobatidis at JGI
- ↑ Spizellomyces punctatus at BROAD: Origins of Multicellularity Database
- ↑ Allomyces macrogynus at BROAD: Origins of Multicellularity Database
- ↑ Gonapodya prolifera at JGI
- ↑ Piromyces sp. at JGI
- ↑ Catenaria anguillulae at JGI
- ↑ Lua error in package.lua at line 80: module 'strict' not found.
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